An Easy Guide for Practical Biochemistry Divya Shanthi D’sa, Lakshmi Sowbhagya
INDEX
Page numbers followed by f refer to figure, fc refer to flowchart.
A
Accidental
fire 6
swallow of corrosive solutions 6
Accidents 11
Acetic acid 57, 100
dilute 87
Acetoacetic acid 103105
Acetone 103
Acid
hydrolysis 35, 36
reaction with 30
strong 6, 30
weak 30
Acid-base regulation, role in 149
Acidic condition 88
Acidic medium, reduction under 37
Addison's disease 137
Adjustable slit 126
Agarose gel electrophoresis 170
Alanine aminotransferase 182, 185
Albumin 58, 154156, 197, 268
functions of 58
in urine, estimation of 197
loss of 159
physical properties of 59
Albuminuria 198
Alcoholic male, chronic 204
Aldehyde test 64
Aldoses 27
Alimentary glycosuria 103
Alkalies
metals 192
reaction with 29
strong 7, 30
weak 29
Alkaline
condition, reduction under 33
copper reagent 135
phosphatase 249, 268
Alkaloidal reagents, precipitation by 53
Alkaptonuria 106, 119, 227
Alpha amino acids 61
Amino acid 48, 57, 165
metabolism 118
Amino aciduria 168
Aminonaphthnol sulfonic acid 243
Ammonia 94, 268
test for 89
Ammonium
molybdate 87
sulfate 49
half-saturation with 48
Analytical errors 260
Anemia 187, 206
Anticoagulants 16
Anuria 96
Apparatus, types of 171
Ascitic fluid 15
Ascorbic acid 188, 224
Aspartate aminotransferase 182, 185
Aspartate transaminase 210
B
Bacillus subtilis 118
Barfoed's reagent 37, 242
Barfoed's test 30, 37
Barium chloride 86
Beakers 19
Beer's law 129
Bence-Jones proteins 198, 227
in urine, test for 198
Benedict's qualitative
method 180, 181
reagent 33
Benedict's quantitative reagent 35
Benedict's reagent 242
Benedict's test 30, 33, 35, 36, 102, 103, 222, 246
after acid hydrolysis 36
Benedict's uric acid
reagent 75, 92
test 75
Benzidine 8
reagent 242
Bicarbonate 268
Bile acids 222
Bile pigments, test for 107
Bile salts, test for 106
Biochemical parameters aids 3
Biochemistry, internal assessment for 272
Biuret
formation 72
method 158
reagent 59, 155, 243
test 59, 60
Blood 4, 15, 270
collection of 16
glucose level 175
fasting 175, 177
glucose, random 209
pH 97, 209, 210 pH 97
preservation of 133
specimen 133
sugar 210
estimation of 133, 134, 180
fasting 209
test for 109
transfusion, incompatible 218
unclotted 16
urea 205, 206, 207, 209
causes of increased 142
estimation of 140
Brain tumors 196
Bromocresol green method 156
Burettes 20
Burns 6
Butyric acid 105
C
Calcium 94, 132, 149, 268
test for 87, 88
Caprylic alcohol 115
Carbohydrate 42, 44fc
classification 27
functions of 29
intensification of 44
moiety in proteins 68
qualitative analysis of 27
reactions of 29
tests for 30
Carbon atoms, number of 27
Carboxyhemoglobin 111, 115
Centrifuge tubes 23
Cerebrospinal fluid 4, 15, 47, 193195, 270
analysis 193
Charged particles, migration of 170
Chemical
characteristics 82
reaction 82
constituents 98
handling 12
tests 75, 85
waste 9
Chloride 86, 94, 193, 268
test for 85
Cholesterol 187
conc. 187
oxidase peroxidase methodology 186
Chromatography 163, 164
classification of 164, 165fc
Chromic acid 24
Chromoproteins 45
Cirrhosis of liver, diagnosis of 170
Coagulation abnormalities 110
Cole's mercuric nitrite test 63
Colloids, types of 47
Color, development of 135
Colorimeter 126
application of 132
components of 126
steps in operation of 131
Colorimetry, principles of 125
Conical flasks 19
Conversion chart 271
Copper 269
sulfate 33
Corrosive gases, inhalation of 6
C-reactive protein 269
Creatine 269
kinase 269
phosphate 221
Creatinine 76, 146
clearance test 147
detection of 241
phosphokinase 194
reacts 93
test for 77, 93
Cuprous hydroxide 102
Cushing syndrome 137, 234
Cuvette 127
Cystinuria 168
D
Dehydroascorbic acid 188
Demonstration practicals 161
Desiccators 24
Diabetes mellitus 137, 152, 196
Diabetic ketoacidosis 222
Diacetly monoxime 140, 141, 243
Diazobenzene sulfonic acid 67
Dibasic acid 267
Dichromate-sulfuric acid mixture 24
Dihydrouracil 237
Dihydroxy cholecalciferol 238
Dihydroxyacetone 27
Dinitrophenylhydrazine 182
Disaccharide 28
reducing 28
Dispensers 24
Distilled water 135
Dopamine producing cells 228
Double oxalate 16
Drop bottles 21
E
Electrophoresis 169, 169f, 170
basic requirements of 171
types of 170
Electrophoretic patterns 174f
Endocrine dysfunction 235
Enzymatic method 175
Enzyme reagent 138
Equivalent weight 263
of acid 266
Erlenmeyer type 19
Errors observed, types of 258
Erythrocyte 270
Erythrose 27
Erythrulose 27
Esbach's albuminometer 197
Esbach's reagent 197
Ether 8
Ethereal sulphate, test for 94
Ethylenediaminetetraacetic acid 16
F
Ferric chloride test 119
Ferricyanide oxidizes ferrous iron 115
Fibrinogen 269
Filter 126
Fire safety, precautions regarding 5
Fiske and Subbarow method 149
Fixed volume type 23
Flame photometer 190, 191f
parts of 191
Flasks 19
Flat-bottomed round flasks 20
Folin-Wu
filtrate 137
method 133, 134, 180, 208, 249
tube 23, 232
Fouchet's reagent 108
Fouchet's test 108, 219, 251
Fraunhofer's lines 113
Fructosazone 41
Fructose 27, 42, 103
Funnels 20
G
Galactose 27, 103
Galactosemia 226
Gallstones 15
Gerhardt's test 104, 105
Glassware
cleaning of 24
handling 12
types of 19
Globulin-free filtrate 155
Globulins 154, 269
precipitation of 155
Glucoheptose 27
Glucosazone 40
Glucose 27, 42, 103, 133, 193, 269
concentration of 138
determination of 195
fasting 269
level, low 196
oxidase 138, 139
method 133, 138, 180
peroxidase method 180
test 215
solution
standard 138
stock 265
standard 135
tolerance test 175
lag type 176
normal response 175
Glucose-6-phosphatase, deficiency of 137
Glycated hemoglobin 269
Glyceraldehyde 27
Glycoproteins 45
Glycosuria, causes of 103
Gmelin's test 107, 219, 251
Graduated cylinder 20
Graduated pipettes 22
Gram molecular weight 263
Guthrie's bacterial inhibition test 118
H
Hemoglobin
derivatives of 111
detection of 112
reduced 114
Hemorrhage, severe 159
Hartnups disease 227
Hay's test 106, 241
Hazards 3
Heat and acetic acid test 56, 98
Heat and acid, precipitation by 56
Heating substances 12
Heavy metal ions, precipitation by 54
Heller's nitric acid ring test 101
Hematin 112
Hematuria 110
Hemin 112
crystals 116f, 117
preparation of 116
Hemochromogen 111
Hemoglobin 109, 111, 203, 269
and derivatives, preparation of 113
derivatives of 111
of adult 111
of fetal life 111
of postnatal 111
Hemolysis 15
Hemolytic jaundice 251
Heptoses 27
Heteropolysaccharides 29
Hexokinase method 180
Hexoses 27
Histidine 67
Homocystinuria 120
screening test for 121
Homogentisic acid 106
oxidase 227
Homopolysaccharides 29
Hopkins-Cole-Adam's test 64
Hydrochloric acid 18
Hydronephrosis 142
Hyperbilirubinemic toxic 219
Hyperglycemia 137
Hyperparathyroidism 152
Hyperphosphatemia 152
Hyperpituitarism 137, 213
Hypertension, malignant 110, 142
Hyperthyroidism 187
Hypoalbuminemia, diagnosis of 170
Hypoxanthine 237
I
Imidazole pyruvic acid in histidinemia 106
Increased tolerance 177, 178f
Indican in Hartnup disease 106
Indole nucleus 64
Infections, diagnosis of chronic 170
Injuries 11
Inorganic
constituents 85
sulfates 94
test for 86
Insulin therapy 153
Intrinsic errors 258
Iodine
reagent 32
test 30, 32, 242
Iron, salts of 55
Isoelectric precipitation 51
Isotonic sodium chloride solution 194
J
Jaffe's alkaline picrate method 144
Jaffe's test 77, 93, 241
K
Kayser-Fleischer ring 225
Ketone bodies, test for 103
Ketonuria 105
Ketoses 27
Kidney stones 15
L
Laboratory
first aid 7
glasswares 19
hazard
and first aid 3
signs of 4f
safety rules 10
general guidelines 10
Lactate dehydrogenase 269
Lactosazone 41
Lactose 42, 103
Lag type 177f
Lambert's law 129
Lens, condensing 126
Levey-Jennings chart 255
Light, source of 126
Lipoprotein 45, 154, 269
high-density 268
low-density 268
Liver diseases 187
Long's coefficient 84
Lumbar puncture 193
M
Magnesium 94, 149
Malabsorption 187
Malnutrition 187
Maltosazone 41
Maltose 42
Mannose 27
Maple syrup urine disease 227
Measuring cylinder 20
Melanin 106
Metaloproteins 45
Metaphosphoric acid 189
Methemoglobin 111, 115
Micropipettes 22
Microscopic hematuria 110
Millon's reagent 63, 242
Millon's test 63
Mixture reagent 242
Molality 263
Molisch reagent 31, 68, 242
Molisch test 30, 31, 68, 240
Monochromator 191
Monosaccharide 27, 28
present, type of 28
Multiple myeloma, diagnosis of 170
Murexide test 76
Myeloma, multiple 99, 227
N
Nanogram 270
Native hemoglobin 111
Nebulizer 191
Needles 191
Nelson-Somogyi method 133
Nephritis 142
Nephrotic syndrome 142, 159
diagnosis of 170
Neumann's test 69
Ninhydrin 167
reagent 61
test 60, 61
Nippe's fluid 116, 243
Nitrogenous substances 71
Nonesterified fatty acids 269
Nonprotein nitrogenous substances 71
Non-reducing disaccharides 28
Nucleoproteins 45
O
Odor 97
Oligosaccharide 28
type of 28
Oliguria 96
Optical density 125
Organic
constituents 90
phosphorus, test for 69
proteinuria 100
solvents, precipitation by 52
sulfate 94
Orthophosphoric acid 75
Orthotolidine 8
Osazone
mixture 39
test 30, 39
Osteomalacia 152
in adults 238
O-toluidine method 133, 180
Oxalate precipitates 137
Oxyhemoglobin 111, 113
formation of 114
P
Pancreatitis 137
Paper chromatography 164, 167f
Paper electrophoresis 171
Parkinson's disease 216
Pasteur pipettes 22
Pauly's test 67
Pellagra 224
Pentasaccharide 28
Pentose 27, 103
Peptide bonds 154
Perchloric acid 8
Peroxidase 109
Phenothiazine derivatives 106
Phenyl
acetate 214
pyruvate 214
acid 106
Phenylhydrazine 39
Phenylketonuria 106, 118, 168, 226
Pheochromocytoma 137
Phosphate 270
test for 87
Phospholipids 270
Phosphoprotein 45, 58
Phosphorus 94, 132, 149
Phosphotungstic acid 75
reduction test 75
Photo detectors 191
Photometer-colorimeter, components of 127f
Photometry 125
principle 125
Physiological importance, substance of 78
Picric acid 8, 93
Pictogram 270
Pipettes 21
manual 21
type of 21
Pipetting and delivery of liquids 14f
Pipetting techniques 13
Plasma 270
ascorbic acid, estimation of 188
bicarbonate 209
protein 158
separation of 171
Pleural fluid 15
Polyacrylamide gel electrophoresis 170
Polycystic kidney 142
diseases 110
Polysaccharides 28
Polyuria 96
Postanalytical errors 260
Postrenal causes 142
Potassium 94, 149, 190192, 270
ferricyanide 115
oxalate 16, 88
salt of indoxyl sulfate 94
Preanalytical errors 259
Prerenal causes 142
Prostate specific antigen 270
Protein 70fc, 156, 270
classification 45
color reactions for 57
conjugated 45, 154
determination of total 194
fractions, movement of different 172
free filtrate 135, 188
preparation of 135, 150
functions of 46
identification of unknown 70
loosing enteropathy 159
precipitation 47
reactions of 46
primary derived 46
qualitative analysis of 45
reactions of 46
secondary derived 46
simple 45
solution, standard 155
standard 194
test for 98
total 193
Proteinuria
functional 100
types of 100
Pseudouridine 237
Q
Qualitative tests 25
Quality control 252
accuracy 253
chart 255
external 256, 257
important terms 253
internal 256
material in laboratory 256
necessity of 252
precision 253
programs 256
sensitivity 253
specificity 253
standard 254
Quantitative tests 123
R
Radioactive waste 9
Reading chart 255
Reagent 121, 134, 138
bottles 21
Red blood cell 15
Renal
causes 142
failure
acute 142
chronic 142
glycosuria 179
Retardation factor 165
Ribose 27
Ribulose 27
Rickets 152, 212
Rothera's test 103, 105, 222, 241, 246
positive 247
Round bottomed flasks 20
S
Safety measures 3
Safety signs 13f
Sakaguchis test for guanidine group 65
Salicylates 106
Saliva 15
Salts, precipitation by 48
Saturated solution 265
Schiff's test 75, 92
Scurvy 224
Sedoheptulose 27
Seliwanoff's reagent 38, 242
Seliwanoff's test 30, 38, 39
Serum 138, 155, 270
albumin 156, 206, 207
alkaline phosphatase 201, 202
bicarbonate 210
bilirubin 201, 202, 203
calcium 206, 207
ceruloplasmin 213
cholesterol 207, 209
estimation of 186
copper 213
creatinine 205, 206, 207, 209
filtrate 155
inorganic phosphate 205
estimation of 149
mucoid 154
plasma 186
protein electrophoresis 173f
total protein 209
estimation of 154
urea 140
uric acid 205
Sickle cell anemia 218
Sodium 94, 149, 190, 191, 270
acetate acts 39
carbonate 33, 266
citrate 33
concentration of 192
hydroxide 144, 266
hypobromite 72
test 72, 90
sulfite 154
treatment 155
Specific gravity 82, 97
determination of 83
Specimen collection and processing 15
Spectroscope 112f
Spinal canal 193
Spot test 118, 119
Spotters 229
Spray chamber 191
Standard deviation 254
Starch 43
Steroid hormones 222
Stock reagent 265
Sucrose 43
Sugar
of blood 133
reducing 103
test for reducing 102
type of 27
Sulfosalicylic acid 101, 194
test 101
Sulfur test for cysteine 66
Sulfuric acid 150
Synovial fluids 15
Systemic errors 258
T
Test solution 128
Test tubes 23
Tetrasaccharide 28
Tetroses 27
Thermal energy 190
Thiocyanate 94
Thyroglobulin 270
Tolerance, decreased 178f
Transferase 268
Trichloroacetic acid 188
Trioses 27
Trisaccharide 28
Tungstic acid 54, 134
Tyrosine 67
U
Unconjugated bilirubin 251
Units of mass 271
Urea 71, 270
concentration of 141
nitrogen 270
test for 71, 90
Urease test, specific 73, 91
Uric acid 74, 91, 94, 270
test for 74, 91
Urinary
amylase 205
chloride, decreased 86
protein 207
Urine 4, 79, 270
abnormal constituents in 95
analysis of
abnormal 98
normal 83
bile
pigments 201, 203
salts 201
constituents of normal 82
copper 213
creatinine, estimation of 144
examination of 79
ketone bodies 209
of alkaptonuric patients 119
protein 206
qualitative analysis of normal 79
samples 15
collection of 17
preservation of 17, 80
specimens 17
sugar 209
estimation of 180, 181
Urinometer 83
V
Van den Bergh test 220, 251
Variable volume adjustable type 23
Vision spectroscope, direct 112
Vitamin A 270
C 224, 270
D 222, 238
deficiency 152, 229
E 270
Volumetric
flasks 20
pipettes 22
W
Wash bottles 21
Waste disposal 9
Wilson's disease 225
X
Xanthoproteic test 62
Xerophthalmia 224
Xylose 27
Xylulose 27
×
Chapter Notes

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1Laboratory Rules and Regulations2
  • Laboratory Hazards and First Aid
  • Laboratory Safety Rules
  • Specimen Collection and Processing
  • Glasswares Used in Biochemistry Laboratory

Laboratory Hazards and First AidCHAPTER 1

 
INTRODUCTION
Biochemical parameters aids in diagnosis and prognosis of diseases. The medical students should have the knowledge of the various tests, diagnostic investigations done in biochemistry laboratory. They should also be aware of all potential hazards and the safety measures.
 
HAZARDS
The student is surrounded by many dangers (Fig. 1.1) such as:
  • Broken glassware
  • Corrosive reagents
  • Mechanical hazards
  • Poisonous fumes that could be inhaled
  • Inflammable chemicals
  • Gas leakages
  • Electrical hazards.
 
SAFETY MEASURES
  • Laboratory coat has to be worn in order to protect oneself from corrosive splashes
  • One has to be careful while handling gases4
zoom view
Fig. 1.1: Signs of some laboratory hazard
  • Blood, urine, cerebrospinal fluid (CSF) and other biological fluids should be handled with great care as they are potential sources of infections like human immunodeficiency virus (HIV) and hepatitis
  • Chemical work involving irritating chemicals and dangerous infectious materials should always be conducted under hoods with good exhaust and adequate ventilation
  • Safety cabinets and hoods should be used while handling corrosive reagents5
  • Electrical heater and other electrical appliances should be checked and insulated frequently. Damage should be rectified immediately
  • Bunsen burner should never be used around inflammable material like ether, and acetone
  • General health should be maintained at all costs as an effective means for keeping natural immunity and resistance
  • Eating and drinking in the laboratory must be avoided.
 
CARE WHILE PIPETTING
  • Exercise great care and take precautions while mouth pipetting. The mouth of the pipette should be plugged with cotton or piece of rubber while filling
  • One should not be engaged in conversation or other disturbances
  • Automatic dispensers and automatic pipettes must be used for pipetting acids, alkalis, corrosive solutions and poisonous solutions
  • The hands should be kept free of cuts and abrasion
  • Hands should be washed with soap water followed by washing with disinfectant material
  • Pipettes and other instruments employed should be placed immediately in disinfectant solution.
 
PRECAUTIONS REGARDING FIRE SAFETY
  • Open flames should not be left unattended
  • Any leakage of gas should be properly attended and reported
  • Smoking should be strictly prohibited
  • Burning matchsticks should not be thrown in waste baskets.6
 
IN CASE OF ACCIDENTAL FIRE
  • Sand or blanket should be used to put off the small fire
  • For longer blazes, “Fire Extinguishers” have to be used
  • Water should not be used on electrical fire
  • Water should not be used on a fire caused by organic solvents such as ether, alcohol, petrol, etc.
  • While trying to escape from fire, in case if it cannot be extinguished quickly, it is safe to stay close to the floor and crawl by covering mouth with damp cloth.
 
ACCIDENTAL SWALLOW OF CORROSIVE SOLUTIONS
If the corrosive solution swallowed is an acid:
  • Spit the corrosive solution
  • Promptly rinse the mouth
  • Antidotes such as 8% magnesium hydroxide (milk of magnesia) or egg white mixed in water can be used orally to neutralize the acid
  • Seek medical help immediately.
If the corrosive solution swallowed is an alkali:
  • Promptly rinse the mouth
  • Antidotes such as lemon juice or 5% acetic acid can be taken orally to neutralize the alkali
  • Seek medical help immediately.
 
INHALATION OF CORROSIVE GASES
Take the student to fresh air and seek medical help immediately.
 
BURNS
From strong acids:
  • First wash with lots of water and then wash with 5% sodium carbonate or 5% ammonium hydroxide
  • Seek medical help immediately.7
From strong alkalies:
  • Wash immediately with lots of water and later with 5% boric acid or dilute acetic acid solution
  • Seek medical help immediately.
 
LABORATORY FIRST AID
Laboratory first aid refers to the immediate help given to an injured person. The first aid kit should contain:
  • Cotton wool and gauze
  • Roller bandage
  • Scissors
  • Acetic acid
  • Milk of magnesia
  • Spirit
  • Adhesive tapes
  • Disinfectant solution
  • About 5% sodium carbonate.
 
PRECAUTIONS TO BE TAKEN WHILE HANDLING CHEMICALS
  • All chemicals should be considered as potentially dangerous and should be handled carefully. One should be aware that accidental injuries can occur either from direct contact through skin, by inhaling vapors, powder or swallowing by mistake while pipetting
  • Clear labeling of all the bottles containing chemicals and reagents should be done and their potential hazards should be noted on the label
  • Reagent bottles should be held with both hands and should not be carried by holding their necks
  • The reagent bottles in use should be kept on shelf at the eyelevel of the user8
  • Corrosive chemicals should be opened with great care and added slowly to water with continuous cooling and stirring as these substances can destroy the living tissue, e.g. Strong acids like sulfuric acid, hydrochloric acid and strong alkalies like potassium hydroxide, sodium hydroxide, etc.
  • Automatic dispensers should be used to dispense acids, alkalies and corrosive liquids
  • Toxic chemicals such as cyanides, barbiturates must be kept locked in cupboards and mouth pipetting of these should be avoided at any cost
  • Some organic solvents are highly toxic to certain organs, e.g. Benzene is toxic to bone marrow; carbon tetrachloride and halogenated hydrocarbons are toxic to liver, etc. Hence, their use should be minimized in assays
  • Precautions must be taken while handling carcinogenic substances such as benzidine, orthotolidine. Bottles containing such substances have to be labeled as carcinogenic. Skin contact with them must be strictly avoided and rubber or plastic gloves should be used while handling these substances
  • One has to be careful while handling explosive substances. Certain precautionary measures must be followed like:
    • Perchloric acid should be kept in fume cupboard
    • Picric acid should be stored in a container of water tightly closed with cork or rubber stopper
    • Ether should be kept in brown or dark bottles away from sunlight since on exposure to sunlight they form peroxides, that when raised to certain sufficient concentration cause violent explosion
    • Cylinder containing inflammable gases like hydrogen, propane, acetylene should be kept outside the laboratory when not in use.9
 
IN CASE OF ACCIDENTS IN THE LABORATORY
  • One should not be panic
  • Alarm should be raised as soon as possible
  • The laboratory should be evacuated, to minimize further damage to property
  • Gas and electricity connections have to be turned off immediately
  • In case of fire attacks, fire extinguishers should be used to tackle them
  • In case of large fires, the fire brigade has to be called.
 
WASTE DISPOSAL
 
Chemical Waste
  • Neutralization of acids and alkalies should be done prior to their washing in the sink
  • Organic solvents should be stored in metal drums and later it must be washed off
  • Some chemicals can be cleared or disposed by incineration.
 
Radioactive Waste
Expert opinion has to be taken for the disposal of radioactive waste, and their guidelines have to be strictly followed. Flushing radioactive substances down the sink can be very dangerous as they pollute the underground water table.