Essentials of Practical Microbiology Apurba Sankar Sastry, Sandhya Bhat K
INDEX
A
Acid-fast stain 16
Acinetobacter 123
Actinomyces 19
Acute glomerulonephritis 76
Acute rheumatic fever 76
Adenovirus 138
Aerotolerant anaerobes 22
African sleeping sickness 212
Agar 30
Agar dilution method 52
Agglutination reaction 55
Albert stain 17
Alcohols 24
Alkaline peptone water 31
Anaerobic chamber 35
Anaerobic glove box 35
Ancylostoma duodenale 235
Anoxomat instrument 35
Anthrax toxin 91
Antimicrobial susceptibility testing methods 49
Ascaris lumbricoides 235
Ascoli's thermo precipitin test 92
Asepsis 24
Aspergillosis 193
Astrovirus 138
Autoclave 24
Automated culture techniques 46
B
Bacillary dysentery 108
Bacillus anthracis 19
Bacitracin sensitivity testing 77
Bactec 46
Bacteria, factors affecting growth of 21
Bacterial colony, morphology of 39
Bacterial growth curve 20
Bacterial motility 39
Bacteriological loops 33
Bacteriological straight wires 33
Basal media 30
BCG 255
Bile esculin agar test 80
Bile solubility test 83
Biomedical waste management 253
Blastomyces dermatitidis 185
Blood agar 31
Blood culture media 31
Bollinger bodies 141
Bordetella pertussis 19
Botulism 93
Bright-field or light microscope 6
Broth dilution method 51
Brucella 125
Brugiya malayi 243
C
C. botulinum 93
C. difficile 93
C. tetani 93
Calicivirus 138
Camp test 77
Candida albicans 187
Candidiasis 187
Candle jar 35
Capacity test 29
Cary-Blair medium 32
Catalase test 41
Central sterile services department 28
Chagas disease 211
Chick Martin test 29
Chikungunya virus 138
Chlorhexidine 24
Chlorine 24
Chocolate agar 31
Citrate utilization test 41
Clonorchis spp. 230
Clostridium difficile 96
Clostridium perfringens 93
Clostridium tetani 95
Coagglutination test 59
Coagulase test 73
Coccidioides immitis 185
Steps of Collection of blood for blood culture 38
Complement fixation test 55
Coronavirus 138
Corynebacterium diphtheriae 19, 88
Cresol 24
Cryptococcosis 189
Cryptosporidium 220
Cyclospora 220
Cysteine lactose electrolyte-deficient agar 32
Cysticercosis 224
Cystoisospora 220
Cytomegalovirus 138
D
D bodies 211
Dark-field microscope 6
Dengue virus 138
Deoxycholate citrate agar 31
Deoxyribonuclease test 73
Depth filters 24
Dermatophyte infection 181
Differential coliform count 248
Dimorphic fungi 177
Diphtheria 88
Diphtheroids 19
Diphyllobothrium latum 228
Diphyllobothrium spp. 224
Disinfectant testing 29
Disinfection 24
DPT 255
E
Echinococcus 224
Eijkman test 248
Electron microscope 6
Enriched media 30
Enrichment broth 30
Entamoeba coli 205
Entamoeba histolytica 205
Enteric fever 111
Enterobius vermicularis 235, 236
Enterococcus 19, 79
Enterococcus faecalis 80
Enzyme-linked immunosorbent assay 55
Epidermophyton 181
Epsilometer 52
Escherichia 102
E-test 52
Ethylene oxide 24
Extrapulmonary tuberculosis 97
F
Facultative anaerobes 22
Fasciola hepatica 230
Filtration 24
Flaming 24
Floatation technique 203
Fluorescence microscope 6
Formaldehyde 24
Formol-ether technique 203
G
Gamma rays 24
Gas gangrene 93
Gas-pak system 36
Gelatin stab agar 92
Giardia lamblia 207
Glutaraldehyde 24
Gonorrhea 87
Gram staining 13
Gram-negative broth 31
H
Haemophilus 19
Haemophilus influenzae 124
Hand hygiene 252
Hand hygiene, five moments for 252
Handrub 4
Handwash 4
Hanging drop method 40
Hepatitis viruses 161
Herpes simplex virus 138
Hiss's serum sugar media 90
Histoplasma capsulatum 185
Hot air oven 24
Hot method 16
Human immunodeficiency virus 138, 167
Human papillomavirus 138
Hydatid disease 224
Hydrogen peroxide 24
Hymenolepis nana 224, 228
I
Immunochromatographic test 55
Immunofluorescence assay 55
Inclusion bodies 141
Indole test 41
Influenza virus 138
Inspissation 24
Intestinal flukes 230
Inulin fermentation 83
In-use test 29
Iodophors 24
J
Japanese encephalitis virus 138
K
Kelsey and Maurer test 29
Kelsey-Sykes test 29
Kinyoun's cold acid-fast staining 98
Kinyoun's method 17
Kirby-Bauer disk diffusion method 49
Klebsiella 102
L
Laboratory standards institute guidelines 73
Lateral flow assay 55
Latex agglutination test 59
Lawn or carpet culture 34
Leishmania donovani 210
Leptospirosis 131
Liquid culture 34
Loeffler's serum slope 31
Löwenstein-Jensen medium 31, 99
Lysol 24
M
MacConkey agar 32
Madurella mycetomatis 183
Mannitol salt agar 72
McFadyean's reaction 92
McIntosh and Filde's anaerobic jar 35
McNeal, Novy, Nicolle medium 211
Medusa head appearance 92
Membrane filters 24
Metachromatic granules 89
Methicillin-resistant Staphylococcus aureus 74
Microaerophilic bacteria 22
Micrococcus 19
Micrometry 5
Microscopic agglutination test 132
Microsporum 181
Minimum inhibitory concentration 51
Molds 177
Molluscum bodies 140, 141
Molluscum contagiosum virus 138
Multiple tube method 248
Mycetoma 182
Mycobacterium leprae 100
Mycobacterium tuberculosis 99
N
Nagler's reaction 94
Necator americanus 235
Necrotizing fasciitis 76
Negative staining 18
Negri bodies 140
Neisseria gonorrhoeae 86
Neisseria meningitidis 85
Nocardia 19
Nutrient agar 30
Nutrient broth 30
O
Obligate aerobes 22
Obligate anaerobes 22
Opisthorchis spp 230
Ortho-phthalaldehyde 24
Owl's eye inclusion 140
Oxidase tests 41
P
Paracoccidioides brasiliensis 185
Paragonimus westermani 230
Parainfluenza virus 138
Parvovirus 138
Pasteurization 24
Penicilliosis 196
Peptone water 30
Peripheral blood smear 214
Petroff's method 98
Phase-contrast microscope 6
Phenol coefficient test 29
Pike's medium 32
Plasma sterilization 24
Plasmodium falciparum 213
Plasmodium knowlesi 213
Plasmodium malariae 213
Plasmodium ovale 213
Plasmodium vivax 213
Pneumococcus 19, 81
Pneumocystis pneumonia 197
Polioviruses 138
Polymerase chain reaction 47
Polysaccharide vaccine 116
Potassium tellurite agar 31
Pour-plate culture 35
Practical examination pattern 259
Presumptive coliform count 248
Proteus 19, 102
Pseudomembranous colitis 93
Pseudomonas aeruginosa 121
Pulmonary tuberculosis 97
Pyocyanin 121
Q
Quantitative buffy coat 217
R
Rabies virus 138
Rapid diagnostic tests, disadvantages of 219
Rapid plasma reagin test 130
Reduviid bugs 211
Respiratory syncytial virus 138
Reverse camp 95
Reverse passive hemagglutination assay 59
Rhinosporidiosis 185
Rhinovirus 138
Rideal Walker test 29
Robertson's cooked meat broth 32
Romana's sign 211
Rose spots 111
Rotavirus 138
Rubella virus 138
S
Sabin-Feldman test 221
Salmonella 102
Satellitism 125
Saturated salt solution technique 203
Scalded-skin syndrome 72
Scarlet fever 76
Schistosoma haematobium 230
Schistosoma japonicum 230
Schistosoma mansoni 230
Scrub typhus 133
Sedimentation technique 203
Selenite F broth 31
Settle plate method 250
Shigella 102
Significant bacteriuria 104
Simple media 30
Simple staining 11
Slit sampler method 250
Specimen collection 37
Spotter list 260
Stab culture 34
Standard agglutination test 126
Staphylococcus 19
Sterilization 24
Stokes disk diffusion method 51
Streak culture 33
Streptobacillus 19
Streptococcus 19
Streptococcus agalactiae 79
Streptococcus pneumoniae 82
Streptococcus pyogenes 75
String of pearl appearance 92
Strongyloides stercoralis 235, 238
Superficial mycoses 180
Syphilis 128
T
T. brucei gambiense 212
T. brucei rhodesiense 212
Taenia saginata 224
Taenia solium 224
Tetanus 93
Tetrathionate broth 31
Thayer Martin medium 87
Thiosulfate citrate bile salt sucrose agar 31
Toxic shock syndrome 72
Toxoplasma 220
Transport media 31, 32
Trichomonas vaginalis 208
Trichophyton 181
Trichuris trichiura 235
Triple sugar iron agar test 41
Trypanosoma 211
Tuberculosis 97
Tyndallization 24
Typhoral 116
Tzanck smear 140
U
Ultraviolet rays 24
Urea hydrolysis test 41
V
Varicella zoster virus 138
VDRL test 128
Venkatraman-Ramakrishnan medium 32
Vernier caliper 50
Vibrio cholerae 117
Viridans streptococci 83
W
Weil's disease 131
Weil-Felix test 133
Western blot 55
Wuchereria bancrofti 242
X
Xylose lysine deoxycholate agar 31
Y
Yeast 177
Z
Ziehl-Neelsen technique 16, 98
×
Chapter Notes

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1General Microbiology
Section Outline
  • 1. Introduction to Microbiology Department
  • 2. Microscopy
  • 3. Simple Staining
  • 4. Gram Staining
  • 5. Special Staining
  • 6. Bacterial Morphology, Growth
  • 7. Sterilization and Disinfection
  • 8. Culture Media
  • 9. Culture Methods
  • 10. Specimen Collection, Direct Microscopy, Processing for Culture and Motility Testing
  • 11. Conventional Identification of Bacteria (Biochemical Reactions)
  • 12. Automated Culture and Molecular Techniques
  • 13. Antimicrobial Susceptibility Testing2

Introduction to Microbiology DepartmentCHAPTER 1

This is the first practical class in the Department of Microbiology. In this class, a formal interaction between students and teachers (faculty/postgraduate students) takes place where:
  • The students and the teacher introduce themselves.
  • Batch distribution: Students are divided into batches and bench teachers are allotted for each batch.
  • Departmental tour: Students are taken for the departmental tour. Activities/investigations carried out in each section are briefed to the students.
  • General instructions to be followed during the practical classes are conveyed to the students.
 
GENERAL INSTRUCTIONS
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Fig. 1.1: Steps of handrub and handwashSource: World Health Organization